Explore Kota Kinabalu with Fare Deals starting at USD 380*!

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*ALL-IN fares includes taxes, fees, and surcharges except applicable Philippine Travel Tax which at passenger's option can be added separately during or after the booking.

Our Most Searched Flights from Manila to Kota Kinabalu

Enjoy amazing fare deals in the next 90 days Manila Kota Kinabalu!

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Manila (MNL)to

Kota Kinabalu (BKI)
26 Oct 2025 - 31 Oct 2025

Round-trip

Economy

From
USD 380
Seen: 7 hrs ago

Fares displayed have been collected within the last 48hrs and may no longer be available at time of booking. Quoted fares includes taxes, fees, and surcharges except PH Travel Tax which is added at the passenger's option during or after the booking.

Enjoy amazing Business Class fares Manila Kota Kinabalu!

Fares displayed have been collected within the last 48hrs and may no longer be available at time of booking. Quoted fares includes taxes, fees, and surcharges except PH Travel Tax which is added at the passenger's option during or after the booking.

Start your adventure from Manila to Kota Kinabalu!

Plan your adventure more than 90 days ahead for good deals

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Manila (MNL)to

Kota Kinabalu (BKI)
01 May 2026 - 09 May 2026

Round-trip

Economy

From
USD 413
Seen: 6 hrs ago

Fares displayed have been collected within the last 48hrs and may no longer be available at time of booking. Quoted fares includes taxes, fees, and surcharges except PH Travel Tax which is added at the passenger's option during or after the booking.

Popular flights from Manila to Kota Kinabalu

 

Book your flights to Kota Kinabalu today!