*ALL-IN fares includes taxes, fees, and surcharges except applicable Philippine Travel Tax which at passenger's option can be added separately during or after the booking.
Explore Kota Kinabalu with Fare Deals starting at USD 380*!
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1 Passenger, All Cabins
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Our Most Searched Flights from Manila to Kota Kinabalu
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Enjoy amazing fare deals in the next 90 days Manila Kota Kinabalu!
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Manila (MNL)to
Kota Kinabalu (BKI)
26 Oct 2025 - 31 Oct 2025
Round-trip
Economy
From
USD 380
Seen: 7 hrs ago
Fares displayed have been collected within the last 48hrs and may no longer be available at time of booking. Quoted fares includes taxes, fees, and surcharges except PH Travel Tax which is added at the passenger's option during or after the booking.
Enjoy amazing Business Class fares Manila Kota Kinabalu!
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There are no fares that match your filter criteria. Please adjust your filters.
There are no fares that match your filter criteria. Please adjust your filters.Fares displayed have been collected within the last 48hrs and may no longer be available at time of booking. Quoted fares includes taxes, fees, and surcharges except PH Travel Tax which is added at the passenger's option during or after the booking.
Start your adventure from Manila to Kota Kinabalu!
Plan your adventure more than 90 days ahead for good deals
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Manila (MNL)to
Kota Kinabalu (BKI)
01 May 2026 - 09 May 2026
Round-trip
Economy
From
USD 413
Seen: 6 hrs ago
Fares displayed have been collected within the last 48hrs and may no longer be available at time of booking. Quoted fares includes taxes, fees, and surcharges except PH Travel Tax which is added at the passenger's option during or after the booking.
Popular flights from Manila to Kota Kinabalu