Discover Manila to Japan Flights with Philippine Airlines

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*ALL-IN fares includes taxes, fees, and surcharges except applicable Philippine Travel Tax which at passenger's option can be added separately during or after the booking.

Popular PAL Flight Deals Manila Japan!

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Manila (MNL)to

Tokyo (NRT)
29 Aug 2026 - 31 Aug 2026

Round-trip

Economy

From
USD 269
Seen: 9 hrs ago

Manila (MNL)to

Fukuoka (FUK)
05 Sep 2026 - 11 Sep 2026

Round-trip

Economy

From
USD 296
Seen: 1 day ago

Manila (MNL)to

Nagoya (NGO)
29 Sep 2026 - 03 Oct 2026

Round-trip

Economy

From
USD 308
Seen: 1 day ago

Manila (MNL)to

Nagoya (NGO)
18 Sep 2026 - 26 Sep 2026

Round-trip

Economy

From
USD 308
Seen: 8 hrs ago

Manila (MNL)to

Fukuoka (FUK)
08 Sep 2026 - 16 Sep 2026

Round-trip

Economy

From
USD 324
Seen: 11 hrs ago

Manila (MNL)to

Tokyo (NRT)
21 Oct 2026 - 29 Oct 2026

Round-trip

Economy

From
USD 338
Seen: 1 day ago

Manila (MNL)to

Tokyo (HND)
11 Oct 2026 - 14 Oct 2026

Round-trip

Economy

From
USD 348
Seen: 1 day ago

Manila (MNL)to

Tokyo (HND)
03 Sep 2026 - 09 Sep 2026

Round-trip

Economy

From
USD 348
Seen: 8 hrs ago

Manila (MNL)to

Osaka (KIX)
21 Oct 2026 - 26 Oct 2026

Round-trip

Economy

From
USD 351
Seen: 3 hrs ago

Manila (MNL)to

Osaka (KIX)
19 Sep 2026 - 22 Sep 2026

Round-trip

Economy

From
USD 357
Seen: 1 day ago

Manila (MNL)to

Takamatsu (TAK)
20 Oct 2026 - 27 Oct 2026

Round-trip

Economy

From
USD 724
Seen: 1 day ago

Manila (MNL)to

Okinawa (OKA)
29 Aug 2026 - 04 Sep 2026

Round-trip

Economy

From
USD 794
Seen: 1 day ago

Manila (MNL)to

Akita (AXT)
03 Sep 2026 - 07 Sep 2026

Round-trip

Economy

From
USD 809
Seen: 1 day ago

Manila (MNL)to

Sapporo (CTS)
03 Sep 2026 - 07 Sep 2026

Round-trip

Economy

From
USD 818
Seen: 23 hrs ago

Manila (MNL)to

Sapporo (CTS)
28 Oct 2026 - 02 Nov 2026

Round-trip

Economy

From
USD 824
Seen: 2 hrs ago

Manila (MNL)to

Okinawa (OKA)
05 Aug 2026 - 14 Aug 2026

Round-trip

Economy

From
USD 1,179
Seen: 1 day ago
Fares displayed have been collected within the last 48hrs and may no longer be available at time of booking. Quoted fares includes taxes, fees, and surcharges except PH Travel Tax which is added at the passenger's option during or after the booking.

Popular PAL Business Class Flight Deals Manila Japan!

  • Manila (MNL)to

    Tokyo (HND)
    31 Oct 2026 - 05 Nov 2026
    From
    USD 1,080
    Seen: 1 day ago
    Round-trip
    Business

    Manila (MNL)to

    Tokyo (NRT)
    16 Oct 2026 - 21 Oct 2026
    From
    USD 1,093
    Seen: 21 hrs ago
    Round-trip
    Business

    Manila (MNL)to

    Tokyo (HND)
    14 Oct 2026 - 16 Oct 2026
    From
    USD 1,108
    Seen: 1 day ago
    Round-trip
    Business

    Manila (MNL)to

    Tokyo (HND)
    14 Oct 2026 - 17 Oct 2026
    From
    USD 1,258
    Seen: 1 day ago
    Round-trip
    Business

  • Manila (MNL)to

    Fukuoka (FUK)
    24 Sep 2026 - 28 Sep 2026
    From
    USD 1,354
    Seen: 8 hrs ago
    Round-trip
    Business

    Manila (MNL)to

    Fukuoka (FUK)
    25 Aug 2026 - 08 Sep 2026
    From
    USD 1,354
    Seen: 13 hrs ago
    Round-trip
    Business

    Manila (MNL)to

    Fukuoka (FUK)
    13 Aug 2026 - 18 Aug 2026
    From
    USD 1,354
    Seen: 1 day ago
    Round-trip
    Business

    Manila (MNL)to

    Fukuoka (FUK)
    24 Sep 2026 - 30 Sep 2026
    From
    USD 1,354
    Seen: 20 minutes ago
    Round-trip
    Business

  • Manila (MNL)to

    Nagoya (NGO)
    28 Aug 2026 - 31 Aug 2026
    From
    USD 1,358
    Seen: 1 day ago
    Round-trip
    Business

    Manila (MNL)to

    Nagoya (NGO)
    06 Sep 2026 - 09 Sep 2026
    From
    USD 1,358
    Seen: 11 hrs ago
    Round-trip
    Business

    Manila (MNL)to

    Nagoya (NGO)
    11 Aug 2026 - 16 Aug 2026
    From
    USD 1,358
    Seen: 7 hrs ago
    Round-trip
    Business

    Manila (MNL)to

    Nagoya (NGO)
    19 Oct 2026 - 23 Oct 2026
    From
    USD 1,358
    Seen: 1 hour ago
    Round-trip
    Business

  • Manila (MNL)to

    Osaka (KIX)
    13 Aug 2026 - 16 Aug 2026
    From
    USD 1,432
    Seen: 1 day ago
    Round-trip
    Business

    Manila (MNL)to

    Osaka (KIX)
    04 Oct 2026 - 12 Oct 2026
    From
    USD 1,461
    Seen: 1 day ago
    Round-trip
    Business

    Manila (MNL)to

    Osaka (KIX)
    20 Oct 2026 - 26 Oct 2026
    From
    USD 1,461
    Seen: 1 day ago
    Round-trip
    Business

    Manila (MNL)to

    Osaka (KIX)
    27 Oct 2026 - 31 Oct 2026
    From
    USD 1,461
    Seen: 25 minutes ago
    Round-trip
    Business
Fares displayed have been collected within the last 48hrs and may no longer be available at time of booking. Quoted fares includes taxes, fees, and surcharges except PH Travel Tax which is added at the passenger's option during or after the booking.

Explore new destinations with Philippine Airlines! Popular Flights from Manila to Japan

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Explore new destinations with Philippine Airlines! Popular Flights from Manila to Japan
From
To
Fare Type
Dates
Price
Manila (MNL)Tokyo (NRT)Round-trip
/
Economy		24 Nov 2026 - 28 Nov 2026

From

USD 198

Seen: 7 hrs ago

Manila (MNL)Tokyo (HND)Round-trip
/
Economy		20 Dec 2026 - 28 Dec 2026

From

USD 200

Seen: 2 hrs ago

Manila (MNL)Nagoya (NGO)Round-trip
/
Economy		18 Nov 2026 - 25 Nov 2026

From

USD 280

Seen: 1 day ago

Manila (MNL)Nagoya (NGO)Round-trip
/
Economy		05 Nov 2026 - 10 Nov 2026

From

USD 308

Seen: 1 day ago

Manila (MNL)Tokyo (NRT)Round-trip
/
Economy		13 Feb 2027 - 20 Feb 2027

From

USD 310

Seen: 1 day ago

Manila (MNL)Osaka (KIX)Round-trip
/
Economy		16 Mar 2027 - 20 Mar 2027

From

USD 322

Seen: 1 day ago

*Fares displayed have been collected within the last 48hrs and may no longer be available at time of booking. Fares are quoted with taxes, fees, and surcharges except PH Travel Tax paid at the airport.

Our Most Searched Flights on PAL from Manila to Japan

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keyboard_arrow_down

Manila (MNL)to

Tokyo (NRT)
29 Aug 2026 - 31 Aug 2026
From
USD 269
Seen: 9 hrs ago
Round-trip
Economy

Manila (MNL)to

Fukuoka (FUK)
05 Sep 2026 - 11 Sep 2026
From
USD 296
Seen: 1 day ago
Round-trip
Economy

Manila (MNL)to

Nagoya (NGO)
29 Sep 2026 - 03 Oct 2026
From
USD 308
Seen: 1 day ago
Round-trip
Economy

Manila (MNL)to

Nagoya (NGO)
18 Sep 2026 - 26 Sep 2026
From
USD 308
Seen: 8 hrs ago
Round-trip
Economy

Manila (MNL)to

Fukuoka (FUK)
08 Sep 2026 - 16 Sep 2026
From
USD 324
Seen: 11 hrs ago
Round-trip
Economy

Manila (MNL)to

Tokyo (NRT)
21 Oct 2026 - 29 Oct 2026
From
USD 338
Seen: 1 day ago
Round-trip
Economy

Manila (MNL)to

Tokyo (HND)
11 Oct 2026 - 14 Oct 2026
From
USD 348
Seen: 1 day ago
Round-trip
Economy

Manila (MNL)to

Tokyo (HND)
03 Sep 2026 - 09 Sep 2026
From
USD 348
Seen: 8 hrs ago
Round-trip
Economy

Manila (MNL)to

Osaka (KIX)
21 Oct 2026 - 26 Oct 2026
From
USD 351
Seen: 3 hrs ago
Round-trip
Economy

Manila (MNL)to

Osaka (KIX)
19 Sep 2026 - 22 Sep 2026
From
USD 357
Seen: 1 day ago
Round-trip
Economy

Manila (MNL)to

Takamatsu (TAK)
20 Oct 2026 - 27 Oct 2026
From
USD 724
Seen: 1 day ago
Round-trip
Economy

Manila (MNL)to

Okinawa (OKA)
29 Aug 2026 - 04 Sep 2026
From
USD 794
Seen: 1 day ago
Round-trip
Economy

Manila (MNL)to

Akita (AXT)
03 Sep 2026 - 07 Sep 2026
From
USD 809
Seen: 1 day ago
Round-trip
Economy

Manila (MNL)to

Sapporo (CTS)
03 Sep 2026 - 07 Sep 2026
From
USD 818
Seen: 23 hrs ago
Round-trip
Economy

Manila (MNL)to

Sapporo (CTS)
28 Oct 2026 - 02 Nov 2026
From
USD 824
Seen: 2 hrs ago
Round-trip
Economy

Manila (MNL)to

Okinawa (OKA)
05 Aug 2026 - 14 Aug 2026
From
USD 1,179
Seen: 1 day ago
Round-trip
Economy
*Fares displayed have been collected within the last 48hrs and may no longer be available at time of booking. Quoted fares includes taxes, fees, and surcharges except PH Travel Tax paid at the airport.